List of applications in Causal MD on Essentia Proteomica server.
This suite of tools allows to analyze causal relationships
between signal-channels from molecular dynamics (MD) simulation data using the normalized Direct Transfer Function (DTF).
When publishing results using CausalMD, please cite the following reference:
P. Daniluk, M. Dziubinski, B. Lesyng, M. Hallay-Suszek, F. Rakowski, L. Walewski,
From experimental probability distributions
to the theoretical causality analysis of molecular changes,
Computer Assisted Methods in Engineering and Science, 19, 257-276 (2012).
Currently available services:
- Causal DTF
- Causal relations from MD - DTF formalism
- Causal SBC
- Schwartz-Bayes Criterion