List of applications in Causal MD on Essentia Proteomica server.

This suite of tools allows to analyze causal relationships between signal-channels from molecular dynamics (MD) simulation data using the normalized Direct Transfer Function (DTF).

When publishing results using CausalMD, please cite the following reference:

P. Daniluk, M. Dziubinski, B. Lesyng, M. Hallay-Suszek, F. Rakowski, L. Walewski,
From experimental probability distributions to the theoretical causality analysis of molecular changes,
Computer Assisted Methods in Engineering and Science, 19, 257-276 (2012).

Currently available services:

Causal DTF
Causal relations from MD - DTF formalism
Causal SBC
Schwartz-Bayes Criterion